FSSP DATABASE PDF

Abstract: FSSP (families of structurally similar proteins) is a database of structural alignments of proteins in the Protein Data Bank. (PDB) (1). The current release. PDF | FSSP (families of structurally similar proteins) is a database of structural alignments of proteins in the Protein Data Bank (PDB). The database currently. FSSP (families of structurally similar proteins) is a database of structural alignments of proteins in the Protein Data Bank (PDB) [1]. The database currently .

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Other sites 0 entries edit. An alternative way of defining clusters in protein fold space is used to derive the PDBfolds series of structurally representative sets using algorithm 2 of ref. Cluster analysis statistical cluster.

The FSSP database: fold classification based on structure-structure alignment of proteins

ShindyalovPhilip E. The FSSP database contains a fold classification based on exhaustive structural alignments of known structures. Wikiversity 0 entries edit.

Monomeric restriction endonuclease BcnI in the apo form and in an asymmetric complex with target DNA. The FSSP database of structurally aligned protein fold families. National Center for Biotechnology InformationU.

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The FSSP database: fold classification based on structure-structure alignment of proteins.

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By using this site, you agree to the Terms of Use and Privacy Policy. This paper has highly influenced 11 other papers. Determinants of a protein fold.

The FSSP database of structurally aligned protein fold families.

ArthurRoland L. Add comment Close comment form modal. A multiple sequence alignment of four protein families: Databass patterns are conserved in all members of the protein families as seen by extending the structure alignment with the results from a sequence database search Most newly determined protein sequences can be classified into families by sequence homology.

Support Center Support Center. All structured data from the main, property and lexeme namespaces is available under the Creative Commons CC0 License ; text in the other namespaces is available fsdp the Creative Commons Attribution-ShareAlike License ; additional terms may apply. Firing squad synchronization problem Search for additional papers on this topic.

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The structure comparison program Dali 9 defines the extent of the common structural core by maximizing the agreement of intra molecular CA-CA distances. Knowledge based modelling of homologous proteins, Fsep I: TaylorIosif I.

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The major new developments since last year 5 are continuous updates of the database and easy access to the data using browsers on the World Wide Web WWW.

The FSSP database: fold classification based on structure-structure alignment of proteins.

Ning LanGaetano T. Holm L, Sander C.

Size of dataase Current Release. FSSP entries are parsed on the fly to display structural neighbours of individual proteins in the form of structure alignments laid out horizontally, multiple structure alignments known structures combined with multiple sequence alignments [sequences homologous to a known structure: Structural alignment defines the register of each of the families indicated in the FSSP column relative to p21 ras.

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Tertiary structural constraints on protein evolutionary diversity: Database of homology-derived protein structures and the structural meaning of sequence alignment.